Photonic integrated circuits enable programmable non-Abelian 'braiding' of light states

A research team has successfully implemented a programmable spinor lattice on a photonic integrated circuit (PIC). This platform enables the realization of non-Abelian physics, in which the outcome of ...
Indian Defence Review

After 50 Years, Scientists Discover a New Blood Group That Changes Transfusion Medicine

In 1972, a pregnant woman’s blood sample was collected for routine tests. It was here that something unusual was discovered: her blood lacked a surface antigen, known as the AnWj antigen, which was ...
IEEE

Sequence Alignment and Dual-Graph Fusion-Based Manifold Regularization for Root-Cause Identification of Industrial Alarm Floods

Abstract: Accurately identifying the root causes of alarm floods is essential for safe and efficient operations of industrial processes. While similarity analysis methods have been developed for ...
marktechpost

How to Create a Bioinformatics AI Agent Using Biopython for DNA and Protein Analysis

In this tutorial, we demonstrate how to build an advanced yet accessible Bioinformatics AI Agent using Biopython and popular Python libraries, designed to run seamlessly in Google Colab. By combining ...
C&EN

Structure Prediction of Alternate Frame Folding Systems with AlphaFold3

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. Non-Commercial (NC): Only non-commercial uses of the work are permitted. AlphaFold has ...
C&EN

Predicting RNA Structure Utilizing Attention from Pretrained Language Models

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. RNA possesses functional significance that extends beyond the transport of genetic ...
eLife

Protein Language Model Identifies Disordered, Conserved Motifs Driving Phase Separation

This valuable study presents an analysis of evolutionary conservation in intrinsically disordered regions, identified as key drivers of phase separation, leveraging a protein language model. The ...
GitHub

No primary alignment found for reference sequence xyz. This could mean that the entire chromosome xyz is reapeated.

I have two tick Nanopore whole genome assemblies that I'm trying to align. These assemblies have about 60% repeat content. Both assemblies have repeats hard masked. I only want to align the top 15 ...
Scientific Research Publishing

Katoh, K. and Standley, D.M. (2013) MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Molecular Biology and Evolution, 30, 772-780.

ABSTRACT: Genomic surveillance has proven to be a critical source of information for understanding and responding to the COVID-19 pandemic. In Africa, genomic surveillance was very limited, and few ...
GitHub

Keeping 1kb sequences from target genome in LASTZ alignment

I have randomly sampled 1kb sequences from the chicken genome, and I want to use LASTZ to align these sequences against the whole genome of another species. My goal is to ensure that the output ...
Scientific Research Publishing

Hall, T.A. (1999). BioEdit: A User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.

ABSTRACT: This study evaluated the molecular characterization of different ecotypes of B. aegyptiaca populations in the four sites: Koily alpha, Labgar, Ranérou and Ballou according to the environment ...